Highlights
The PASC16 Conference offers six plenary sessions - including one public lecture, as well as minisymposia, contributed talks and poster sessions in eight different scientific domains. It also presents for the first time sessions dedicated to papers selected for publication in the ACM Digital Library.
The program provides time for discussions within PASC scientific disciplines (PASC Networks discussions), and an exhibition space.
Additionally, the conference includes an information event dedicated to users of the Swiss National Supercomputing Centre (CSCS).
SCHEDULE
Wednesday, June 8, 2016
09:00 - 10:00 Registration
10:00 - 12:00 Plenary Presentations (Auditorium C)
- Welcome to the Conference; Nicola Marzari (EPFL, Switzerland)
12:00 - 13:00 Lunch
13:00 - 15:00 Papers & Minisymposia Sessions
ACM PASC16 Papers: Computational Mechanics
Wednesday, June 8, 2016
Auditorium C, 13:00 - 15:00
Chair: Jan Hesthaven (EPFL, Switzerland)13:00 - 13:30 | Automatic Global Multiscale Seismic Inversion: Insights into Model, Data, and Workflow Management, Michael Afanasiev (ETH Zurich, Switzerland) Abstract Full Paper |
13:30 - 14:00 | SWIFT: Using Task-Based Parallelism, Fully Asynchronous Communication, and Graph Partition-Based Domain Decomposition for Strong Scaling on more than 100 000 Cores, Matthieu Schaller (Durham University, United Kingdom) Abstract Full Paper |
14:00 - 14:30 | Performance Analysis and Optimization of Nonhydrostatic ICosahedral Atmospheric Model (NICAM) on the K Computer and TSUBAME2.5, Hisashi Yashiro (RIKEN / Advanced Institute for Computational Science, Japan) Abstract Full Paper |
14:30 - 15:00 | Approximate Bayesian Computation for Granular and Molecular Dynamics Simulations, Lina Kulakova (ETH Zurich, Switzerland) Abstract Full Paper |
MS01 Advanced Computational Methods for Applications to the Cardiovascular System I (Abstract)
Organiser: | Simone Deparis (EPFL, Switzerland) |
Co-organiser: | Dominik Obrist (University of Bern, Switzerland), Christian Vergara (Politecnico di Milano, Italy) |
Field(s): | Life Sciences, Computer Science & Mathematics |
Presentations
Wednesday, June 8, 2016 | |
Garden 3A | |
13:00 - 13:30 | Junction-Generalized Riemann Problem for Stiff Hyperbolic Balance Laws in Networks of Blood Vessels, Christian Contarino (University of Trento, Italy) Abstract |
13:30 - 14:00 | Accurate Estimation of 3D Ventricular Activation in Heart Failure Patients from Electroanatomic Mapping, Simone Pezzuto (Università della Svizzera italiana, Switzerland) Abstract |
14:00 - 14:15 | FD/FEM Coupling with the Immersed Boundary Method for the Simulation of Aortic Heart Valves, Barna Errol Mario Becsek (University of Bern, Switzerland) Abstract |
14:15 - 14:30 | Simulation of Fluid-Structure Interaction with a Thick Structure via an Extended Finite Element Approach, Stefano Zonca (Politecnico di Milano, Italy) Abstract |
14:30 - 14:45 | Direct Numerical Simulation of Transitional Hydrodynamics of the Cerebrospinal Fluid in Chiari I Malformation, Kartik Jain (University of Siegen, Germany) Abstract |
MS02 Advanced Computing in Plasma, Particle and Astrophysics on Emerging HPC Architectures (Abstract)
Organiser: | Stephan Brunner (EPFL, Switzerland) |
Co-organiser: | Thomas Quinn (University of Washington, United States of America) |
Field(s): | Physics |
Presentations
Wednesday, June 8, 2016 | |
Garden 3C | |
13:00 - 13:30 | GPUs for Cosmological Simulations: Some Experiments with the ATON & EMMA Codes, Dominique Aubert (University of Strasbourg & CNRS, France) Abstract |
13:30 - 14:00 | Gyrokinetic Particle-in-Cell Codes at Exascale: Challenges and Opportunities, Stéphane Éthier (Princeton Plasma Physics Lab, United States of America) Abstract |
14:00 - 14:15 | Interactive Plasma Simulations on Next Generation Supercomputers for Everybody, Axel Huebl (Helmholtz-Zentrum Dresden-Rossendorf, Germany) Abstract |
14:15 - 14:30 | A Portable Platform for Accelerated PIC Codes and its Application to Multi- and Many Integrated Core Architectures Using Hybrid MPI/OpenMP, Emmanuel Lanti (EPFL / Swiss Plasma Center, Switzerland) Abstract |
14:30 - 14:45 | Towards Optimization of a Gyrokinetic Particle-in-Cell (PIC) Code on Large Scale Hybrid Architectures, Noé Ohana (EPFL / Swiss Plasma Center, Switzerland) Abstract |
14:45 - 15:00 | A Thread-Parallel Implementation of High-Energy Physics Particle Tracking on Many-Core Hardware Platforms, Omar Awile (CERN, Switzerland) Abstract |
MS03 Code Generation Techniques for HPC Earth Science Applications (Abstract)
Organiser: | William Sawyer (Swiss National Supercomputing Centre (CSCS), Switzerland) |
Co-organiser: | |
Field(s): | Climate & Weather, Solid Earth Dynamics |
Presentations
Wednesday, June 8, 2016 | |
Garden 3B | |
13:00 - 13:30 | Firedrake: Automating the Finite Element Method by Composing Abstractions, Lawrence Mitchell (Imperial College London, United Kingdom) Abstract |
13:30 - 14:00 | Translating Python into GridTools: Prototyping PDE Solvers Using Stencils, Lucas Benedicic (ETH Zurich / CSCS, Switzerland) Abstract |
14:00 - 14:15 | Omni Compiler and XcodeML: An Infrastructure for Source-to-Source Transformation, Mitsuhisa Sato (RIKEN / Advanced Institute for Computational Science, Japan) Abstract |
14:15 - 14:30 | Using GridTools Library to Implement Preconditioned Conjugate Gradient Krylov Solver, Juraj Kardos (Università della Svizzera italiana, Switzerland) Abstract |
14:30 - 14:45 | Using Generated Matrix Kernels for a High-Order ADER-DG Engine, Angelika Schwarz (Technische Universität München, Germany) Abstract |
14:45 - 15:00 | CLAW Code Manipulation for Performance Portability, Valentin Clément (Center for Climate Systems Modeling (C2SM), ETH Zurich, Switzerland) Abstract |
MS04 First-Principles Simulations on Modern and Novel Architectures (Abstract)
Organiser: | Marc Torrent (CEA Bruyères-le-Châtel, France) |
Co-organiser: | Matteo Giantomassi (Université catholique de Louvain, Belgium) |
Field(s): | Materials |
Presentations
Wednesday, June 8, 2016 | |
Garden 1BC | |
13:00 - 13:20 | Scalable Algorithms for All-Electron Electronic Structure Theory, Volker Blum (Duke University, United States of America) Abstract |
13:20 - 13:40 | Domain Specific Libraries for Material Science Applications, Anton Kozhevnikov (ETH Zurich / CSCS, Switzerland) Abstract |
13:40 - 14:00 | Automating and Optimising ABINIT Calculations on HPC Architectures: Challenges and Possible Solutions., Matteo Giantomassi (Università catholique de Louvain, Belgium) Abstract |
14:00 - 14:20 | VASP on Future Hardware: MIC and GPU Acceleration, Martijn Marsman (University of Vienna, Austria) Abstract |
14:20 - 14:40 | BigDFT: Flexible DFT Approach to Large Systems Using Adaptive and Localized Basis Functions, Thierry Deutsch (CEA, France) Abstract |
14:40 - 15:00 | Sizing Up Linear-Scaling DFT: Recent Applications of ONETEP to Carbon Nanostructures, Arash Mostofi (Imperial College London, United Kingdom) Abstract |
MS05 High-Performance Computing in Fluid Mechanics I (Abstract)
Organiser: | Tobias M. Schneider (EPFL, Switzerland) |
Co-organiser: | Francois Gallaire (EPFL, Switzerland) |
Field(s): | Engineering |
Presentations
Wednesday, June 8, 2016 | |
Garden 2A | |
13:00 - 13:30 | Numerical Simulation of the Dynamics of Non-Spherical Microcapsules, Anne-Virginie Salsac (CNRS & University of Technology of Compiègne, Switzerland) Abstract |
13:30 - 14:00 | High-Performance Computing for Large-Scale Unsteady Simulations of Turbulent Reacting Multi-Phase Flows: Challenges and Perspectives, Vincent Moureau (CORIA, CNRS UMR6614, France) Abstract |
14:00 - 14:30 | Numerical Simulation of Flows with Sharp Interfaces by the Volume-Of-Fluid Method, Stephane Zaleski (University Pierre and Marie CURIE / Institute Jean le Rond d'Alembert, France) Abstract |
14:30 - 14:45 | AFiD-GPU: A Versatile Navier-Stokes Solver for Turbulent Flows, Xiaojue Zhu (University of Twente, Netherlands) Abstract |
14:45 - 15:00 | GPU-Accelerated Hydrodynamic Simulation of Hydraulic Turbines Using the Finite Volume Particle Method, Siamak Alimirzazadeh (EPFL, Switzerland) Abstract |
MS06 Software Engineering Meets Scientific Computing: Generality, Reusability and Performance for Scientific Software Platforms I: Engineering Methodologies and Development Processes (Abstract)
Organiser: | Mauro Santoro (Università della Svizzera Italiana, Switzerland) |
Co-organiser: | Alessandro Margara (Università della Svizzera Italiana, Switzerland) |
Field(s): | Computer Science & Mathematics, Emerging Domains |
Presentations
Wednesday, June 8, 2016 | |
Garden 2BC | |
13:00 - 13:30 | Towards an Engineering Methodology for Multi-Model Scientific Simulations, Mauro Pezzè (Università della Svizzera italiana, Switzerland) Abstract |
13:30 - 14:00 | Abstractions for PDEs, Magne Haveraaen (University of Bergen, Norway) Abstract |
14:00 - 14:30 | A Literate Process for Improving the Quality of Scientific Computing Software, Spencer Smith (McMaster University, Canada) Abstract |
14:30 - 15:00 | The Productivity Gap in HPC, Diego Rossinelli (ETH Zurich, Switzerland) Abstract |
15:00 - 15:30 Break
15:30 - 17:30 Papers & Minisymposia Sessions
ACM PASC16 Papers: Solvers
Wednesday, June 8, 2016
Auditorium C, 15:30 - 17:30
Chair: David Keyes (King Abdullah University of Science and Technology, Saudi Arabia)15:30 - 16:00 | Extreme-Scale Multigrid Components within PETSc, Patrick Sanan (Università della Svizzera italiana, Switzerland) Abstract Full Paper |
16:00 - 16:30 | On the Robustness and Prospects of Adaptive BDDC Methods for Finite Element Discretizations of Elliptic PDEs with High-Contrast Coefficients, Stefano Zampini (King Abdullah University of Science and Technology, Saudi Arabia) Abstract Full Paper |
16:30 - 17:00 | Massively Parallel Hybrid Total FETI (HTFETI) Solver, Lubomír Říha (IT4Innovations National Supercomputing Center, Czech Republic) Abstract Full Paper |
17:00 - 17:30 | An Efficient Compressible Multicomponent Flow Solver for Heterogeneous CPU/GPU Architectures, Fabian Wermelinger (ETH Zurich, Switzerland) Abstract Full Paper |
MS07 Advanced Computational Methods for Applications to the Cardiovascular System II (Abstract)
Organiser: | Simone Deparis (EPFL, Switzerland) |
Co-organiser: | Dominik Obrist (University of Bern, Switzerland), Christian Vergara (Politecnico di Milano, Italy) |
Field(s): | Life Sciences, Computer Science & Mathematics |
Presentations
Wednesday, June 8, 2016 | |
Garden 3A | |
15:30 - 16:00 | Hybridizable Discontinuous Galerkin Approximation of Cardiac Electrophysiology, Julia M. Hoermann (Technical University of Munich, Germany) Abstract |
16:00 - 16:30 | Fluid Structure Interaction Model for Heart Assist Device Optimization Studies, Thomas Kummer (ETH Zurich, Switzerland) Abstract |
16:30 - 16:45 | Coupled Mathematical and Numerical Models for Integrated Simulations of the Left Ventricle, Antonello Gerbi (EPFL, Switzerland) Abstract |
16:45 - 17:00 | Computational Study of the Risk of Restenosis in Coronary Bypasses, Bruno Guerciotti (Politecnico di Milano, Italy) Abstract |
17:00 - 17:15 | An Overset Grid Method for Oxygen Transport from Red Blood Cells in Capillary Networks, Adrien Lücker (ETH Zurich, Switzerland) Abstract |
MS08 Asynchronous Data-Flow Driven Programming with GASPI (Abstract)
Organiser: | Christian Simmendinger (T-Systems SfR, Germany) |
Co-organiser: | |
Field(s): | Engineering, Emerging Domains |
Presentations
Wednesday, June 8, 2016 | |
Garden 2A | |
15:30 - 16:00 | A Practical Approach to Efficient and Scalable Programming Strategies Exploration for Large HPC Application, Eric Petit (Université de Versailles Saint-Quentin-en-Yvelines, France) Abstract |
16:00 - 16:30 | Computational Fluid Dynamics (CFD) with GASPI, Christian Simmendinger (T-Systems International GmbH, Germany) Abstract |
16:30 - 17:00 | Distributed Matrix Factorization in C++ Using TBB, OpenMP, GASPI, Tom Vander Aa (IMEC, Belgium) Abstract |
17:00 - 17:30 | GASPI: Bringing FDTD Simulations to Extreme Scale, Daniel Grünewald (Fraunhofer ITWM, Germany) Abstract |
MS09 Efficient Data Assimilation for Weather Forecasting on Future Supercomputer Architectures (Abstract)
Organiser: | Yannick Trémolet (ECMWF, United Kingdom) |
Co-organiser: | |
Field(s): | Climate & Weather |
Presentations
Wednesday, June 8, 2016 | |
Garden 3B | |
15:30 - 16:00 | Improving the Scalability of 4D-Var with a Weak Constraint Formulation, Yannick Trémolet (ECMWF, United Kingdom) Abstract |
16:00 - 16:30 | Ensemble Data Assimilation at Météo-France, Yann MICHEL (Meteo-France, France) Abstract |
16:30 - 17:00 | Scalability and Performance of the NEMOVAR Variational Ocean Data Assimilation Software, Marcin Chrust (ECMWF, United Kingdom) Abstract |
17:00 - 17:30 | Numerical Solution of the Time-Parallelized Weak-Constraint 4DVAR, Selime Gurol (CERFACS, France) Abstract |
MS10 From Materials' Data to Materials' Insight by Machine Learning (Abstract)
Organiser: | Michele Ceriotti (EPFL, Switzerland) |
Co-organiser: | Alexandre Tkatchenko (Fritz Haber Institute Berlin, Germany), James Kermode (Warwick, United Kingdom) |
Field(s): | Materials, Emerging Domains |
Presentations
Wednesday, June 8, 2016 | |
Garden 1BC | |
15:30 - 16:00 | Approximate Inference Methods and Scalable Uncertainty Quantification for Molecular Systems, Markos Katsoulakis (University of Massachusetts Amherst, United States of America) Abstract |
16:00 - 16:30 | Kinetic Energy Functionals from Convolutional Neural Networks, John Parkhill (University of Notre Dame, United States of America) Abstract |
16:30 - 17:00 | Machine Learning for Molecules and Materials, Kristof Schutt (Technical University of Berlin, Germany) Abstract |
17:00 - 17:30 | Force Fields Based on a Neural Network Steered Charge Equilibration Scheme, Stefan Goedecker (University of Basel, Switzerland) Abstract |
MS11 HPC Implementations and Numerics for Kinetic Plasma Models (Abstract)
Organiser: | Katharina Kormann (Max-Planck-Institut für Plasmaphysik, Germany) |
Co-organiser: | Jakob Ameres (Technische Universität München, Germany) |
Field(s): | Physics, Computer Science & Mathematics |
Presentations
Wednesday, June 8, 2016 | |
Garden 3C | |
15:30 - 16:00 | Asymptotically Stable Particle-in-Cell Methods for the Vlasov-Poisson System with a Strong External Magnetic Field, Francis Filbet (University of Toulouse, France) Abstract |
16:00 - 16:30 | Decoupling and Coupling in iPIC3D, a Particle-in-Cell Code for Exascale, Ivy Bo Peng (Royal Institute of Technology, Sweden) Abstract |
16:30 - 16:45 | Particle in Fourier Discretization of Kinetic Equations, Jakob Ameres (Technische Universität München, Germany) Abstract |
16:45 - 17:00 | Adaptive Mesh Refinement and Other Adaptive Strategies for Vlasov Simulation, Erwan Deriaz (CNRS, France) Abstract |
17:00 - 17:15 | Parallelization Strategies for a Semi-Lagrangian Vlasov Code, Katharina Kormann (Max Planck Institute for Plasma Physics, Germany) Abstract |
17:15 - 17:30 | Particle-in-Cell Simulations for Vlasov-Poisson Models, Sever Hirstoaga (INRIA, France) Abstract |
MS12 Software Engineering Meets Scientific Computing: Generality, Reusability and Performance for Scientific Software Platforms II: Performance and Scalability Requirements (Abstract)
Organiser: | Mauro Santoro (Università della Svizzera Italiana, Switzerland) |
Co-organiser: | Alessandro Margara (Università della Svizzera Italiana, Switzerland) |
Field(s): | Computer Science & Mathematics, Emerging Domains |
Presentations
Wednesday, June 8, 2016 | |
Garden 2BC | |
15:30 - 16:00 | Heterogeneous Computations on HPC Infrastructures: Theoretical Framework, Bastien Chopard (Univeristy of Geneva, Switzerland) Abstract |
16:00 - 16:30 | Quantum-ESPRESSO Open Source Community Code: The Challenge of Continuous Software Innovation for High-End High Performance Computing, Carlo Cavazzoni (CINECA, Italy) Abstract |
16:30 - 17:00 | Configuration, Profiling and Tuning of a Complex Biomedical Application: Analysis of ISA Extensions for Floating Point Processing, Marco Ferretti (University of Pavia, Italy) Abstract |
17:00 - 17:15 | Working with Limited Resources: Large-Scale Proteomic Data-Analysis on Cheap Gaming Desktop PCs, Oliver Martin Bernhardt (Biognosys AG, Switzerland) Abstract |
18:00 - 18:50 Plenary Presentation (Auditorium C)
Thursday, June 9, 2016
09:00 - 10:00 Plenary Presentation (Auditorium C)
10:00 - 10:30 Break - sponsored by Cray
10:30 - 12:30 Papers, Contributed Talks & Minisymposia Sessions
ACM PASC16 Papers: Libraries and Graphs
Thursday, June 9, 2016
Auditorium C, 10:30 - 12:30
Chair: Torsten Hoefler (ETH Zurich, Switzerland)10:30 - 11:00 | Adaptive Optics Simulation for the World's Largest Telescope on Multicore Architectures with Multiple GPUs, Ali Charara (KAUST, Saudi Arabia) Abstract Full Paper |
11:00 - 11:30 | Benefits of SMT and of Parallel Transpose Algorithm for the Large-Scale GYSELA Application, Guillaume Latu (CEA, France) Abstract Full Paper |
11:30 - 12:00 | A Generic C++ Library for Multilevel Quasi-Monte Carlo, Robert N. Gantner (ETH Zurich, Switzerland) Abstract Full Paper |
12:00 - 12:30 | Context Matters: Distributed Graph Algorithms and Runtime Systems, Andrew Lumsdaine (Indiana University, United States of America) Abstract Full Paper |
CTS01 Contributed Talks Engineering, Life Sciences and Physics
Thursday, June 9, 2016
Garden 3A, 10:30 - 12:30
Chair: Rolf Krause (Università della Svizzera italiana, Switzerland)10:30 - 10:50 | A Comprehensive Description of the Homo and Heterodimerization Mechanism of the Chemokine Receptors CCR5 and CXCR4, Daniele Di Marino (Università della Svizzera italiana, Switzerland) Abstract |
10:50 - 11:10 | Propulsive Advantage of Swimming in Unsteady Flows, Guido Novati (ETH Zurich, Switzerland) Abstract |
11:10 - 11:30 | Self-Consistent Modelling of Plasma Heating and Fast Ion Generation Using Ion-Cyclotron Range of Frequency Waves in 2D and 3D Devices, Jonathan Faustin (EPFL / Swiss Plasma Center, Switzerland) Abstract |
11:30 - 11:50 | Assessment of Transitional Hemodynamics in Intracranial Aneurysms at Extreme Scale, Kartik Jain (University of Siegen, Germany) Abstract |
11:50 - 12:10 | URANS Computations of an Unstable Cavitating Vortex Rope, Jean Decaix (HES-SO Valais-Wallis, Switzerland) Abstract |
CTS02 Contributed Talks Computer Science & Mathematics and Weather & Climate
Thursday, June 9, 2016
Garden 1BC, 10:30 - 12:30
Chair: Bastien Chopard (Univeristy of Geneva, Switzerland)10:30 - 10:50 | Space-Time Parallelism for Hyperbolic PDEs, Allan Nielsen (EPFL, Switzerland) Abstract |
10:50 - 11:10 | PERMON Libraries for Massively Parallel Solution of Contact Problems of Elasticity, Vaclav Hapla (IT4Innovations National Supercomputing Center, Czech Republic) Abstract |
11:10 - 11:30 | Performance Improvement by Exploiting Sparsity for MPI Communication in Sparse Matrix-Matrix Multiplication, Alfio Lazzaro (ETH Zurich, Switzerland) Abstract |
11:30 - 11:50 | The Energy Consumption Optimization of the FETI Solver, David Horak (Technical University of Ostrava / IT4Innovations, Czech Republic) Abstract |
11:50 - 12:10 | Tensor-Product Discretization for the Spatially Inhomogeneous and Transient Boltzmann Equation, Simon Pintarelli (ETH Zurich, Switzerland) Abstract |
12:10 - 12:30 | The GridTools Libraries for the Solution of PDEs Using Stencils, Carlos Osuna (MeteoSwiss, Switzerland) Abstract |
MS13 Development, Adaption, and Implementation of Numerical Methods for Exascale (Abstract)
Organiser: | Matthias Bolten (Universität Kassel, Germany) |
Co-organiser: | Harald Köstler (University of Erlangen-Nuremberg, Germany) |
Field(s): | Computer Science & Mathematics |
Presentations
Thursday, June 9, 2016 | |
Garden 2BC | |
10:30 - 11:00 | Automatic Code Generation for Multigrid Methods on Structured Meshes, Matthias Bolten (Universität Kassel, Germany) Abstract |
11:00 - 11:30 | Highly Scalable Sparse Eigensolvers for Large Quantum Physics Problems on Heterogeneous Computing Systems, Achim Basermann (German Aerospace Center, Germany) Abstract |
11:30 - 12:00 | How to Do Nothing in Less Time, Ivo Kabadshow (Juelich Supercomputing Centre, Germany) Abstract |
12:00 - 12:30 | Fault Tolerance and Silent Fault Detection for Higher-Dimensional Discretizations, Dirk Pflüger (University of Stuttgart, Germany) Abstract |
MS14 High-Performance Computing in Fluid Mechanics II (Abstract)
Organiser: | Tobias M. Schneider (EPFL, Switzerland) |
Co-organiser: | Francois Gallaire (EPFL, Switzerland) |
Field(s): | Engineering |
Presentations
Thursday, June 9, 2016 | |
Garden 2A | |
10:30 - 11:00 | Turbulence Simulations at Extreme Scales: A Path Towards Exascale, Diego Donzis (Texas A&M University, United States of America) Abstract |
11:00 - 11:30 | Fluid Mechanics of Electrochemical Interfaces: Instability and Chaos Near Ion-Selective Surfaces, Ali Mani (Stanford University, United States of America) Abstract |
11:30 - 12:00 | Multiple Solutions in Free-Surface Flows, Andrew L. Hazel (University of Manchester, United Kingdom) Abstract |
12:00 - 12:15 | HPC Simulations of Complex Free-Surface Flow Problems with SPH-Flow Software, Amaury Bannier (Nextflow Software, France) Abstract |
12:15 - 12:30 | A High Resolution Hybrid CUDA-MPI Turbulent Channel Code, Alberto Vela-Martin (Technical University of Madrid, Spain) Abstract |
MS15 HPC for the Big Data Era (Abstract)
Organiser: | Costas Bekas (IBM Research - Zurich, Switzerland) |
Co-organiser: | |
Field(s): | Emerging Domains |
Presentations
Thursday, June 9, 2016 | |
Garden 3B | |
10:30 - 11:00 | Merging the Big Data and HPC Universes: Lessons to be Learned, Costas Bekas (IBM Research, Switzerland) Abstract |
11:00 - 11:30 | Big Data Challenges Arising from Future Experiments, Dirk Pleiter (Juelich Supercomputing Centre, Germany) Abstract |
11:30 - 11:45 | Large Scale Monitoring Data Analytics, Marie-Christine Sawley (Intel, Switzerland) Abstract |
11:45 - 12:00 | Compute, Analyze and Visualize: Novel Workflows on GPU Accelerated Supercomputers, Peter Messmer (NVIDIA, United States of America) Abstract |
12:00 - 12:15 | Accelerated Materials Design: Combining HPC and Cognitive Computing, Peter W.J. Staar (IBM Research, Switzerland) Abstract |
MS16 Understanding the Dynamics of Planetary Dynamos (Abstract)
Organiser: | Philippe Marti (University of Colorado at Boulder, United States of America) |
Co-organiser: | |
Field(s): | Solid Earth Dynamics |
Presentations
Thursday, June 9, 2016 | |
Garden 1A | |
10:30 - 11:00 | Towards a Better Understanding of Rapidly Rotating Convection by Combining Direct Numerical Simulations and Asymptotic Modeling, Stephan Stellmach (University of Münster, Germany) Abstract |
11:00 - 11:30 | Numerical Simulations of Precession Driven Flows and their Ability to Drive a Dynamo, Andre Giesecke (Helmholtz-Zentrum Dresden-Rossendorf, Germany) Abstract |
11:30 - 12:00 | Subcritical Convection in a Rotating Sphere Using an Hybrid 2D/3D Model, Celine Guervilly (Newcastle University, United Kingdom) Abstract |
12:30 - 13:30 | Lunch |
13:30 - 14:00 | Flash Session for Posters (Auditorium C) Chair: Maria Grazia Guffreda (ETH Zurich / CSCS, Switzerland) |
14:00 - 16:00 | Minisymposia Sessions |
MS17 Applications and Algorithms for HPC in Solid Mechanics I: Plasticity (Abstract)
Organiser: | William Curtin (EPFL, Switzerland) |
Co-organiser: | Guillaume Anciaux (EPFL, Switzerland) |
Field(s): | Engineering |
Presentations
Thursday, June 9, 2016 | |
Garden 2BC | |
14:00 - 14:30 | The Development of ParaDiS for HCP Crystals, Tom Arsenlis (Lawrence Livermore National Laboratory, United States of America) Abstract |
14:30 - 15:00 | Deformation and Failure Behavior of Metallic Nanostructures, Yong-Wei Zhang (Institute of High Performance Computing, A*STAR, Singapore) Abstract |
15:00 - 15:20 | An Efficient Interpolation Based Fast Multipole Method for Dislocation Dynamics Simulations, Pierre Blanchard (INRIA, France) Abstract |
15:20 - 15:40 | Multiscale Modelling of Dwell Fatigue in Polycrystalline Titanium Alloys, Zebang Zheng (Imperial College London, United Kingdom) Abstract |
15:40 - 16:00 | Atomistic Modelings of Dislocation Cross-Slips in HCP Metals, Zhaoxuan Wu (EPFL, Switzerland) Abstract |
MS18 Computational Economics (Abstract)
Organiser: | Simon Scheidegger (University of Zurich/Stanford University, Switzerland) |
Co-organiser: | Johannes Brumm (University of Zurich, Switzerland) |
Field(s): | Emerging Domains |
Presentations
Thursday, June 9, 2016 | |
Garden 2A | |
14:00 - 14:30 | Solving Large Systems of Polynomial Equations from Economics on Supercomputers, Kenneth Judd (Stanford University, United States of America) Abstract |
14:30 - 15:00 | Causality Inference in a Nonstationary and Nonhomogenous Framework, Patrick Gagliardini (Università della Svizzera italiana, Switzerland) Abstract |
15:00 - 15:15 | Computing Equilibria in Dynamic Stochastic Macro-Models with Heterogeneous Agents, Johannes Brumm (University of Zurich, Switzerland) Abstract |
15:15 - 15:30 | Solving High-Dimensional Dynamic Stochastic Economies with Active Subspaces and Gaussian Processes, Simon Scheidegger (University of Zurich & Stanford University, Switzerland) Abstract |
15:30 - 15:45 | Uncertainty Quantification and Global Sensitivity Analysis for Economic Models, Daniel Harenberg (ETH Zurich, Switzerland) Abstract |
15:45 - 16:00 | Exact Present Solution with Consistent Future Approximation: A Gridless Algorithm to Solve Stochastic Dynamic Models, Pontus Rendahl (University of Cambridge, United Kingdom) Abstract |
MS19 Harnessing Big Data for Biological Discovery: Scientific Computing at the SIB Swiss Institute of Bioinformatics (Abstract)
Organiser: | Christine Durinx (SIB Swiss Institute of Bioinformatics, Switzerland) |
Co-organiser: | Christophe Dessimoz (University of Lausanne, Switzerland) |
Field(s): | Life Sciences |
Presentations
Thursday, June 9, 2016 | |
Garden 3A | |
14:00 - 14:30 | Coping with Underdetermined Biological Network Inference, Rudiyanto Gunawan (ETH Zurich, Switzerland) Abstract |
14:30 - 15:00 | Large-Scale Analyses of Positive Selection Using Efficient Models of Codon Evolution, Iakov Davydov (University of Lausanne, Switzerland) Abstract |
15:00 - 15:15 | Enhancing the Computational Capabilities for Biologists: Genomic Data Analysis Services at ETH Zurich, Michal Okoniewski (ETH Zurich, Switzerland) Abstract |
15:15 - 15:30 | Strategies for Efficient Detection of Positive Selection on Phylogenetic Trees, Omid Shahmirzadi (University of Lausanne, Switzerland) Abstract |
15:30 - 15:45 | Large-Scale Mass Spectrometry Data Analysis, Oliver Horlacher (Swiss Institute of Bioinformatics, Switzerland) Abstract |
15:45 - 16:00 | Speeding Up All-Against-All Sequence Alignment Among Thousands of Genomes, Christophe Dessimoz (University of Lausanne, Switzerland) Abstract |
MS20 Kilometer-Scale Weather and Climate Modeling on Future Supercomputing Platforms (Abstract)
Organiser: | Christoph Schär (ETH Zurich, Switzerland) |
Co-organiser: | Torsten Hoefler (ETH Zurich, Switzerland) |
Field(s): | Climate & Weather, Computer Science & Mathematics |
Presentations
Thursday, June 9, 2016 | |
Garden 3B | |
14:00 - 14:30 | Path to Exascale Computing: Can We Get Serious About Cloud-Resolving Global Models?, Thomas Schulthess (ETH Zurich, Switzerland) Abstract |
14:30 - 14:45 | Towards Exascale Computing with the ECMWF Model, Peter Bauer (ECMWF, United Kingdom) Abstract |
14:45 - 15:00 | A Decade-Long European-Scale Convection-Resolving Climate Simulation on GPUs: Computation, Validation and Analyses, David Leutwyler (ETH Zurich, Switzerland) Abstract |
15:00 - 15:15 | Exploring Novel Numerical Methods and Algorithms on Emerging Hardware, Gianmarco Mengaldo (ECMWF, United Kingdom) Abstract |
15:15 - 15:30 | Refactoring and Virtualizing a Mesoscale Model for GPUs, Oliver Fuhrer (MeteoSwiss, Switzerland) Abstract |
15:30 - 15:45 | Approaches to I/O Scalability Challenges in the ECMWF Forecasting System, Florian Rathgeber (ECMWF, United Kingdom) Abstract |
15:45 - 16:00 | The Use of Inexact Hardware to Improve Weather and Climate Predictions, Peter D. Dueben (Oxford University, United Kingdom) Abstract |
MS21 Materials Design by High-Throughput Ab Initio Computing (Abstract)
Organiser: | Nicola Marzari (EPFL, Switzerland) |
Co-organiser: | Gian-Marco Rignanese (Université catholique de Louvain, Belgium) |
Field(s): | Materials |
Presentations
Thursday, June 9, 2016 | |
Garden 1BC | |
14:00 - 14:30 | Descriptors that Work: Taming Complexity a Piece at a Time, Marco Fornari (Central Michigan University, United States of America) Abstract |
14:30 - 15:00 | Novel Tools for Accelerated Materials Discovery: Breakthroughs and Challenges in the Mapping of the Materials Genome, Marco Buongiorno Nardelli (University of North Texas, United States of America) Abstract |
15:00 - 15:20 | High-Throughput Prediction of Novel Two-Dimensional Materials, Nicolas Mounet (EPFL, Switzerland) Abstract |
15:20 - 15:40 | Designing New Materials with the High-Throughput Toolkit, Rickard Armiento (Linköping University, Sweden) Abstract |
15:40 - 16:00 | The Long Way to the Discovery of New Magnets Made it Short, Mario Zic (Trinity College Dublin, Ireland) Abstract |
MS22 N-Body Simulations Techniques (Abstract)
Organiser: | Walter Dehnen (Leicester University, United Kingdom) |
Co-organiser: | Joachim Stadel (University of Zurich, Switzerland) |
Field(s): | Physics, Computer Science & Mathematics |
Presentations
Thursday, June 9, 2016 | |
Garden 3C | |
14:00 - 14:20 | N-Body Time Integration: Towards Time Reversability, Walter Dehnen (University of Leicester, United Kingdom) Abstract |
14:20 - 14:50 | A New Reverse Tree-Method for Self Gravity Calculation Applied to Fixed Grid FV Methods, Clement Surville (University of Zurich, Switzerland) Abstract |
14:50 - 15:05 | New Time Step Criterion in Gravitational N-Body Simulations, Hasanuddin (University of Leicester, United Kingdom) Abstract |
15:05 - 15:25 | GENGA: A GPU N-Body Code for Terrestrial Planet Formation, Simon Grimm (University of Zurich, Switzerland) Abstract |
15:25 - 15:45 | Gevolution: A Cosmological N-Body Code Based on General Relativity, David Daverio (African Institute for Mathematical Sciences, South Africa) Abstract |
15:45 - 16:00 | Towards a Multi Million GPU Cores for Exascale Astrophysical High Order Direct N-Body Simulations, Peter Berczik (Heidelberg University, Germany) Abstract |
MS23 Open Source Software (OSS) and High Performance Computing (HPC) (Abstract)
Organiser: | Filippo Broggini (ETH Zurich, Switzerland) |
Co-organiser: | Johan Robertsson (ETH Zurich, Switzerland) |
Field(s): | Solid Earth Dynamics, Computer Science & Mathematics |
Presentations
Thursday, June 9, 2016 | |
Garden 1A | |
14:00 - 14:30 | Open-Source Visualization Based on VTK: Application Case Studies, Jean M. Favre (ETH Zurich / CSCS, Switzerland) Abstract |
14:30 - 14:45 | Data-Parallel Processing Using Madagascar Open-Source Software Package, Sergey Fomel (University of Texas at Austin, United States of America) Abstract |
14:45 - 15:00 | Salvus: A Flexible Open-Source Package for Full-Waveform Modelling and Inversion, Michael Afanasiev (ETH Zurich, Switzerland) Abstract |
15:00 - 15:15 | Leveraging the Madagascar Framework for Reproducible Large-scale Cluster and Cloud Computing, Toby Potter (University of Western Australia, Australia) Abstract |
15:15 - 15:30 | Towards Exascale Seismic Imaging & Inversion, Jeroen Tromp (Princeton University, United States of America) Abstract |
15:30 - 15:45 | A Tetrahedral Spectral Element Method for the Seismic Wave Equation, Max Rietmann (ETH Zurich, Switzerland) Abstract |
MS24 Software Libraries in Computational Science for Many-Core Architectures (Abstract)
Organiser: | Karl Rupp (Freelance Computational Scientist, Austria) |
Co-organiser: | |
Field(s): | Computer Science & Mathematics |
Presentations
Thursday, June 9, 2016 | |
Auditorium C | |
14:00 - 14:30 | Challenges in Software Library Development for GPUs and MIC, Karl Rupp (Freelance Computational Scientist, Austria) Abstract |
14:30 - 15:00 | VexCL: Experiences in Developing a C++ Wrapper Library for OpenCL, Denis Demidov (Kazan Federal University, Russia) Abstract |
15:00 - 15:30 | GHOST: Building Blocks for High Performance Sparse Linear Algebra on Heterogeneous Systems, Moritz Kreutzer (University of Erlangen-Nuremberg, Germany) Abstract |
15:30 - 16:00 | Portability of Performance: The Cases of Kokkos and GridTools, Mauro Bianco (ETH Zurich / CSCS, Switzerland) Abstract |
16:00 - 16:30 Break
16:30 - 17:30 Plenary Presentation (Auditorium C)
17:30 - 19:30 Reception and Poster Exhibition
Posters in Climate & Weather
Thursday, June 9, 2016
17:30 - 19:30
CLI-01 | CLAW Provides Language Abstractions for Weather and Climate Models, Jonathan S. Rood (ETH Zurich, Switzerland) Abstract |
CLI-02 | Climate Change Simulations at Kilometer-Scale Resolution, Nikolina Ban (ETH Zurich, Switzerland) Abstract |
CLI-03 | From Code to Climate: Adjusting Free Parameters in a Global Climate Model, Doris Folini (ETH Zurich, Switzerland) Abstract |
Posters in Computer Science & Mathematics
Thursday, June 9, 2016
17:30 - 19:30
CSM-01 | An Interior-Point Stochastic Approximation Method on Massively Parallel Architectures, Juraj Kardos (Università della Svizzera italiana, Switzerland) Abstract |
CSM-02 | A Novel Approach for Efficient Stencil Assembly in Curved Geometries, Simon Bauer (Ludwig Maximilian University of Munich, Germany) Abstract |
CSM-03 | A Proposal for the Implementation of Discontinuous Galerkin Methods for Elliptic Problems on GPUs, Paolo Gorlani (Politecnico di Milano, Italy) Abstract |
CSM-04 | Automatic Code Generation for Simulations of Non-Newtonian Fluids, Sebastian Kuckuk (University of Erlangen-Nuremberg, Germany) Abstract |
CSM-05 | CloudLightning: Self-Organising, Self-Managing Heterogeneous Cloud, Perumal Kuppuudaiyar (Intel, Ireland) Abstract |
CSM-06 | dCUDA: Hardware Supported Overlap of Computation and Communication, Tobias Gysi (ETH Zurich, Switzerland) Abstract |
CSM-07 | Estimation of Drag and Lift Coefficients for Steady State Incompressible Flow of a Newtonian Fluid on Domains with Periodic Roughness, Dimosthenis Pasadakis (Università della Svizzera italiana, Switzerland) Abstract |
CSM-08 | Fast Randomized Algorithms for Covariance Matrix Computations, Pierre Blanchard (INRIA, France) Abstract |
CSM-09 | Hash Tables on GPUs Using Lock-Free Linked Lists, Andreas Jocksch (ETH Zurich / CSCS, Switzerland) Abstract |
CSM-10 | Polly-ACC Transparent Compilation to Heterogeneous Hardware, Tobias Grosser (ETH Zurich, Switzerland) Abstract |
CSM-11 | Porting SPH-Flow to GPUs Using OpenACC: Experience and Challenges, David Guibert (Nextflow Software, France) Abstract |
CSM-12 | Scalable Implementation of the FFT Kernel for Plane-Wave Codes, Anton Kozhevnikov (ETH Zurich / CSCS, Switzerland) Abstract |
CSM-13 | Towards the HPC-Inference of Causality Networks from Multiscale Economical Data, Lukas Pospisil (Università della Svizzera italiana, Switzerland) Abstract |
Posters in Emerging Domains
Thursday, June 9, 2016
17:30 - 19:30
EMD-01 | Parallelized Dimensional Decomposition for Dynamic Stochastic Economic Models, Aryan Eftekhari (Università della Svizzera italiana, Switzerland) Abstract |
EMD-02 | Large Scale Xeon Phi Parallelization of a Deep Learning Language Model, Hanieh Soleimani (Università della Svizzera italiana, Switzerland) Abstract |
EMD-03 | Parallel MCMC for Estimating Exponential Random Graph Models, Maksym Byshkin (Università della Svizzera italiana, Switzerland) Abstract |
Posters in Life Sciences
Thursday, June 9, 2016
17:30 - 19:30
LS-01 | A Comprehensive Description of the Homo and Heterodimerization Mechanism of the Chemokine Receptors CCR5 and CXCR4, Daniele Di Marino (Università della Svizzera italiana, Switzerland) Abstract |
LS-02 | Generating Very Large Spectral Libraries for Targeted Proteomics Analysis Using Spectronaut, Tejas Gandhi (Biognosys AG, Switzerland) Abstract |
LS-03 | GPU-Accelerated Immersed Boundary Method with CUDA for the Efficient Simulation of Biomedical Fluid-Structure Interaction, Hadi Zolfaghari (University of Bern, Switzerland) Abstract |
LS-04 | How to Synthesize Neurons? A Case Study on Best Practices in Scientific Software Development, Liesbeth Vanherpe (EPFL, Switzerland) Abstract |
LS-05 | Replica-Exchange Enveloping Distribution Sampling: A Robust and Accurate Method to Calculate Multiple Free Energy Differences from a Single Simulation, Dominik Sidler (ETH Zurich, Switzerland) Abstract |
LS-06 | Structural and Dynamic Properties of Cyclosporin A: Molecular Dynamics and Markov State Modelling, Jagna Witek (ETH Zurich, Switzerland) Abstract |
LS-07 | The Importance of N-Methylations for the Stability of the β6.3-Helical Conformation of Polytheonamide B, Annick V. Renevey (ETH Zurich, Switzerland) Abstract |
LS-08 | The UniProt SPARQL Endpoint: 21 Billion Triples in Production, Jerven Bolleman (Swiss Institute of Bioinformatics, Switzerland) Abstract |
Posters in Materials
Thursday, June 9, 2016
17:30 - 19:30
MAT-01 | A Generalized Poisson Solver for First-Principles Device Simulations, Mohammad Hossein Bani-Hashemian (ETH Zurich, Switzerland) Abstract |
MAT-02 | A Periodic Table of Molecules, Sandip De (EPFL, Switzerland) Abstract |
MAT-03 | Complex Wet-Environments in Electronic-Structure Calculations, Giuseppe Fisicaro (University of Basel, Switzerland) Abstract |
MAT-04 | CP2K within the PASC Materials Network, Andreas Glöss (University of Zurich, Switzerland) Abstract |
MAT-05 | Herringbone Reconstruction versus Adsorption Registry: Which One Matters More to Pyrphyrin Adsorption, Yeliz Gurdal (University of Zurich, Switzerland) Abstract |
MAT-06 | Linear Scaling Ehrenfest Molecular Dynamics, Samuel Andermatt (ETH Zurich, Switzerland) Abstract |
MAT-07 | Nuclear Quantum Effects on Calculated Aqueous Redox Properties, Vladimir Rybkin (ETH Zurich, Switzerland) Abstract |
MAT-08 | Probing Defects and Correlations in the Hydrogen-Bond Network of Ab Initio Water, Piero Gasparotto (EPFL, Switzerland) Abstract |
MAT-09 | Sparse Matrix Multiplication Library for Linear Scaling DFT Calculations in Electronic Structure Codes, Sebastiano Caravati (University of Zurich, Switzerland) Abstract |
MAT-10 | What Influences the Water Oxidation Activity of a Bio-Inspired Molecular CoII4O4 Cubane?, Florian Hodel (University of Zurich, Switzerland) Abstract |
Posters in Physics
Thursday, June 9, 2016
17:30 - 19:30
PHY-01 | DIAPHANE: A Library for Radiation and Neutrino Transport in Hydrodynamic Simulations, Darren S. Reed (University of Zurich, Switzerland) Abstract |
PHY-02 | Fractional Quantum Hall Effect and Topological Quantum Computation, Kiryl Pakrouski (ETH Zurich, Switzerland) Abstract |
PHY-03 | Parallelization on a Hybrid Architecture of GBS, a Simulation Code for Plasma Turbulence at the Edge of Fusion Devices, Christoph Wersal (EPFL, Switzerland) Abstract |
PHY-04 | Platform Independent Profiling of a QCD Code, Marina Krstic Marinkovic (CERN, Switzerland) Abstract |
PHY-05 | Polarized Radiative Transfer in Discontinuous Media, Gioele Janett (Istituto Ricerche Solari Locarno, Switzerland) Abstract |
PHY-06 | Soft Norm Conserving Accurate Pseudopotentials, Santanu Saha (University of Basel, Switzerland) Abstract |
Posters in Solid Earth Dynamics
Thursday, June 9, 2016
17:30 - 19:30
EAR-01 | Coupling Geodynamic Seismic Cycle and Dynamic Rupture Models, Iris van Zelst (ETH Zurich, Switzerland) Abstract |
EAR-02 | Flexible Automatic Discretization for Finite Differences: Eliminating the Human Factor, Casper Pranger (ETH Zurich, Switzerland) Abstract |
EAR-03 | Imaging Subsurface Fluid via Poroelastic Theory and Adjoint Tomography, Neslihan Ozmen (Utrecht University, Netherlands) Abstract |
EAR-04 | Implicit Treatment of Inertial Waves in Dynamo Simulations, Philippe Marti (University of Colorado at Boulder, United States of America) Abstract |
EAR-05 | Optimal Utilisation of Piz Daint Memory Bandwidth for a Parallel GPU Two-Phase Solver, Ludovic Raess (University of Lausanne, Switzerland) Abstract |
Friday, June 10, 2016
09:00 - 11:00 Contributed Talks & Minisymposia Sessions
CTS03 Contributed Talks Materials
Friday, June 10, 2016
Garden 1BC, 09:00 - 11:00
Chair: Joost VandeVondele (ETH Zurich, Switzerland)09:00 - 09:15 | A Distance to Map and Understand Materials and Molecules, and to Predict their Properties, Michele Ceriotti (EPFL, Switzerland) Abstract |
09:15 - 09:30 | Ab-Initio Quantum Transport Simulation of Nano-Devices, Sascha Brück (ETH Zurich, Switzerland) Abstract |
09:30 - 09:45 | Parallel Eigensolvers for Plane-Wave Density Functional Theory, Antoine Levitt (INRIA, France) Abstract |
09:45 - 10:00 | Diffusion Mechanisms in Li0.5CoO2: A Computational Study, Teutë Bunjaku (ETH Zurich, Switzerland) Abstract |
10:00 - 10:15 | DFT Study of Realistic Zigzag Graphene Nanoribbons, Prashant Shinde (Empa, Switzerland) Abstract |
10:15 - 10:30 | Thermomechanical Modeling of Impacting Particles on a Metallic Surface for the Erosion Prediction in Hydraulic Turbines, Sebastian Leguizamon (EPFL, Switzerland) Abstract |
10:30 - 10:45 | Understanding the Magnetic and Conductive Properties of Hybrid Materials by High-Throughput Screening, Davide Tiana (EPFL, Switzerland) Abstract |
10:45 - 11:00 | Local Density Fitting within a Gaussian and Plane Waves Approach: Accelerating Simulations Based on Density Functional Theory, Dorothea Golze (University of Zurich, Switzerland) Abstract |
MS25 Applications and Algorithms for HPC in Solid Mechanics II: Multiscale Modelling (Abstract)
Organiser: | William Curtin (EPFL, Switzerland) |
Co-organiser: | Guillaume Anciaux (EPFL, Switzerland), J. F. Molinari (EPFL, Switzerland) |
Field(s): | Engineering |
Presentations
Friday, June 10, 2016 | |
Garden 2A | |
09:00 - 09:30 | On the Use of Thermal Boundary Conditions in a Lubricated Contact Multiscale Framework, Nicolas Fillot (INSA Lyon, France) Abstract |
09:30 - 09:55 | Concurrent Coupling of Particles with a Continuum for Dynamical Motion of Solids, Guillaume Anciaux (EPFL, Switzerland) Abstract |
09:55 - 10:20 | A Parallel Algorithm for Multiscale Atomistic/Continuum Simulations, Fabio Pavia (ANSYS, Switzerland) Abstract |
10:20 - 10:40 | Multiscale Modeling of Frank-Read Source, Jaehyun Cho (EPFL, Switzerland) Abstract |
10:40 - 11:00 | Multiscale Modelling of Materials Failure Processes: Bridging from Atomistic to Continuum Scales, James Kermode (University of Warwick, United Kingdom) Abstract |
MS26 Bridging Scales in Geosciences (Abstract)
Organiser: | Ylona van Dinther (ETH Zurich, Switzerland) |
Co-organiser: | Dave A. May (ETH Zurich, Switzerland), Michael Bader (Leibniz Supercomputing Centre, Technische Universitaet Muenchen, Germany) |
Field(s): | Solid Earth Dynamics |
Presentations
Friday, June 10, 2016 | |
Garden 1A | |
09:00 - 09:30 | HPC Challenges Arising in Forward and Inverse Mantle Flow Simulation, Georg Stadler (New York University, United States of America) Abstract |
09:30 - 10:00 | Insights from Modeling Frictional Slip Fronts and a Comparison with Experimental Observations, David Kammer (Cornell University, United States of America) Abstract |
10:00 - 10:15 | From Tectonic to Seismic Timescales in 3D Continuum Models, Casper Pranger (ETH Zurich, Switzerland) Abstract |
10:15 - 10:30 | Non-Periodic Homogeneization for Seismic Forward and Inverse Problems, Yann Capdeville (CNRS, France) Abstract |
10:30 - 10:45 | Dynamically Linking Seismic Wave Propagation at Different Scales, Filippo Broggini (ETH Zurich, Switzerland) Abstract |
10:45 - 11:00 | Computational Challenges of Electromagnetic Modeling at Multiple Scales, Vladimir Puzyrev (Barcelona Supercomputing Center, Spain) Abstract |
MS27 CADMOS: HPC Simulations, Modeling and Large Data (Abstract)
Organiser: | Bastien Chopard (Univeristy of Geneva, Switzerland) |
Co-organiser: | Nicolas Salamin (University of Lausanne, Switzerland), Jan Hesthaven (EPFL, Switzerland) |
Field(s): | Computer Science & Mathematics |
Presentations
Friday, June 10, 2016 | |
Garden 3C | |
09:00 - 09:30 | Numerical Simulation of Falling Non-Spherical Particles with Air Resistance, Jonas Latt (University of Geneva, Switzerland) Abstract |
09:30 - 10:00 | Efficient Approaches to Model Evolution in Computational Biology, Nicolas Salamin (Swiss Institute of Bioinformatics, Switzerland) Abstract |
10:00 - 10:30 | Fluid-Structure Interaction for Vascular Flows: From Supercomputers to Laptops, Simone Deparis (EPFL, Switzerland) Abstract |
10:30 - 11:00 | Progress and Challenges in Multiscale Simulation of Cellular Blood Flow, Cyrus Aidun (Georgia Institute of Technology, United States of America) Abstract |
MS28 Level of Detail in Brain Modeling: Common Abstractions and their Scientific Use (Abstract)
Organiser: | Markus Diesmann (Forschungszentrum Juelich, Germany) |
Co-organiser: | Felix Schuermann (EPFL, Switzerland) |
Field(s): | Life Sciences |
Presentations
Friday, June 10, 2016 | |
Garden 2BC | |
09:00 - 09:20 | Technology for Brain-Scale Simulation at Cellular Resolution, Markus Diesmann (Forschungszentrum Jülich, Germany) Abstract |
09:20 - 09:40 | Multi-Scale Modeling of Cortex at Cellular Resolution, Sacha J. van Albada (Forschungszentrum Jülich, Germany) Abstract |
09:40 - 10:00 | Large-Scale Detailed Neuron Modeling and Simulation, Felix Schuermann (EPFL, Switzerland) Abstract |
10:00 - 10:20 | Reconstruction and Simulation of Neocortical Microcircuitry, Eilif B. Muller (Blue Brain Project, EPFL, Switzerland) Abstract |
10:20 - 10:40 | From Data to Models: A Semi-Automatic Workflow for Large-Scale Brain Models, Marc-Oliver Gewaltig (EPFL, Switzerland) Abstract |
10:40 - 11:00 | In Silico Synthesis of Spatially-Embedded Neuronal Morphologies, Liesbeth Vanherpe (EPFL, Switzerland) Abstract |
MS29 Molecular Neuromedicine: Recent Advances by Computer Simulation and Systems Biology (Abstract)
Organiser: | Paolo Carloni (Juelich Supercomputing Centre, Germany) |
Co-organiser: | Giulia Rossetti (JSC and RWTH-UKA, Germany), Mercedes Alfonso-Prieto (University of Barcelona, Spain) |
Field(s): | Life Sciences, Physics |
Presentations
Friday, June 10, 2016 | |
Garden 3A | |
09:00 - 09:30 | Effect of Lipidation for G Protein Mediated Signalling, Ursula Röthlisberger (EPFL, Switzerland) Abstract |
09:30 - 10:00 | Computer Simulations Provide Guidance for Molecular (Neuro)medicine, Marc Baaden (CNRS, France) Abstract |
10:00 - 10:15 | Ligand Binding to the Human Adenosine Receptor hA 2A R in Nearly Physiological Conditions, Giulia Rossetti (Forschungszentrum Jülich & RWTH Aachen University, Germany) Abstract |
10:15 - 10:45 | Exploring Protein Dynamics, Modesto Orozco (Institute for Research in Biomedicine, Spain) Abstract |
10:45 - 11:00 | Simulations of Ion Channel Modulation by Lipids, Mercedes Alfonso-Prieto (University of Barcelona, Spain) Abstract |
11:00 - 11:30 Break
11:30 - 12:30 Plenary Presentations (Auditorium C)
- Poster Recognition Ceremony
Chair: Maria Grazia Guffreda (ETH Zurich / CSCS, Switzerland)
- Closing Session; Thomas Schulthess (ETH Zurich / CSCS, Switzerland)
12:30 - 14:00 Lunch (own arrangements)
14:00 - 15:00 Plenary Presentation (Auditorium C)
- CSCS Roadmap and Upgrade of Piz Daint; Thomas Schulthess (ETH Zurich / CSCS, Switzerland)
15:00 - 18:00 PASC Networks Discussion
PND01 Climate & Weather
Friday, June 10, 2016
15:00 - 18:00, Garden 3A
SNF Sinergia-Project "Convection-Resolving Climate Modeling on Future Supercomputing Platforms (crCLIM)"
Chair: | Christoph Schaer (ETH Zurich, Switzerland) |
This session will serve as the 1st annual meeting of the crCLIM (Convection-resolving climate modeling on future supercomputing platforms) project (http://www.c2sm.ethz.ch/research/crCLIM.html). In the first part of the session we will present and discuss the current status and first results from each subproject, while the second part will have a focus on discussion of future steps and needs of the project.
15:00 - 15:10 | Welcome and Introduction Christoph Schär, Thomas Schulthess |
15:10 - 15:30 | Continental-Scale Convection-Resolving Climate Simulations Nikolina Ban, David Leutwyler and Christoph Schär |
15:30 - 15:50 | Eulerian and Lagrangian Online Analysis of Synoptic Features and Water Transport Nicolas Piaget, Stefan Rüdisühli, Michael Sprenger and Heini Wernli |
15:50 - 16:10 | Adapting Weather and Climate Models for Hybrid Many-Core Computing Architectures Andrea Arteaga, Christophe Charpilloz, Oliver Fuhrer and Philippe Steiner |
16:10 - 16:30 | Virtualized Climate Simulations: An Online Analysis Platform for High-Resolution Climate Models Salvatore Di Girolamo and Torsten Hoefler |
16:30 - 16:50 | Coffee break |
16:50 - 17:50 | Discussion |
17:50 - 18:00 | Wrap-up and Goodbye |
PND02 Materials
Friday, June 10, 2016
15:00 - 18:00, Garden 3B
Chair: | Nicola Varini (EPFL, Switzerland) |
This session will present and discuss the work done by the application support specialists embedded in the materials community. The main goal is to share the acquired knowledge on different aspect of material science code development, in order to support the community on the adoption of effective computational solutions.
Topics will include portable data formats, benchmark strategies to identify and monitor bottlenecks, automated and distributed regression testing, domain-specific libraries to address computationally intensive kernels, and data federation and dissemination.
Presentations: | Nicola Varini: Portability in Quantum-ESPRESSO: HDF5 Implementation and AiiDA Benchmark Platform |
Andreas Gloess: CP2K within the PASC Materials Network | |
Anton Kozhevnikov: Computationally Intensive Kernels for Plane-Wave Codes | |
Martin Uhrin: Introduction to the MaterialsCloud, a High-Throughput Federated Platform for Computational Science | |
Discussion |
PND03 Physics
Friday, June 10, 2016
15:00 - 17:30, Garden 1A
Chair: | Claudio Gheller (CSCS / ETH Zurich, Switzerland) |
The Physics network has developed a number of different algorithms for a variety of codes in the fields of plasma physics, astrophysics and cosmology, in order to provide effective solutions for scientific challenges which requires cutting-edge HPC architectures. These solutions have been designed with the idea of being extensible and reusable by different codes as library components. The session will focus on sharing and discussing the current achievements by the various development teams and on the definition of the steps needed to provide a unified product (library) available to the whole community.
15:00 - 15:20 | The PIC-Engine, Porting on Different Architectures, toward a General Charge/Mass Deposition Library (A. Jocksch) |
15:20 - 15:40 | Toward a New Implementation of the ORB5 Code (L. Villard) |
15:40 - 16:00 | A New Data Structure for the RAMSES Code based on Hash Tables (R. Teyssier) |
16:00 - 16:20 | An RT Library for Different Simulation Codes (L. Mayer) |
16:20 - 16:40 | Neutrino Transport (M. Liebendörfer) |
16:40 - 17:00 | MDL: A Scalable, Portable Library for Massive Parallelism (TBD) |
17:00 - 17:30 | "Putting (almost) all together": Discussion |
PND04 Solid Earth Dynamics
Friday, June 10, 2016
15:00 - 18:00, Garden 2A
Chair: | Andreas Fichtner (ETH Zurich, Switzerland) |
This session will serve as an informal discussion round on the current and future HPC needs of the Solid Earth Dynamics Network. In the first part of the discussion, we will review the current status of the multi-physics simulation code SALVUS currently developed jointly by various groups in the network. The focus will be on goals for the future development of SALVUS, development strategies and the manpower needed to ensure the continuation of SALVUS. In the second part, we will discuss the general future HPC requirements of the different groups in the network. In addition to clearly defining our needs, this is intended to help finding possible synergies.